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AMCA conjugates absorb light maximally at around 350 nm and fluoresce maximally at around 450 nm (Table 2 and Figure 13). For fluorescence microscopy, AMCA can be excited with a mercury lamp and observed using a UV filter set. Since blue fluorescence is not well detected by the human eye, AMCA-conjugated secondary antibodies should be used only with the most abundant antigens in multiple-labeling experiments. Ways of improving the visibility of AMCA include dark adapting the eyes, using fluorite instead of glass objectives, avoiding mounting media that absorb UV light (such as plastic-based media), and capturing photographic images with blue-sensitive film or CCD cameras. AMCA fades rapidly in conventional epifluorescence and confocal microscopy, and therefore it should be used with mounting media containing an anti-fading agent, such as n-propyl gallate.
Table 2. Approximate peak wavelengths of excitation and emission for JIR conventional and DyLight fluorophores conjugated to affinity-purified
antibodies. Only approximate values are given for purposes of comparing one fluorophore with another. Actual values may vary depending on the spectrofluorometer used in each laboratory.
| Fluorophore |
Excitation Peak (nm) |
Emission Peak (nm) |
| DyLight 405 |
400 |
421 |
| Aminomethylcoumarin, AMCA |
350 |
450 |
| Cyanine, Cy2 |
492 |
510 |
| DyLight 488 |
493 |
518 |
| Fluorescein, FITC |
492 |
520 |
| DyLight 549 |
555 |
568 |
| Indocarbocyanine, Cy3 |
550 |
570 |
| Tetramethyl Rhodamine, TRITC |
550 |
570 |
| Rhodamine Red-X, RRX |
570 |
590 |
| DyLight 594 |
591 |
616 |
| Texas Red, TR |
596 |
620 |
| Indodicarbocyanine, Cy5 |
650 |
670 |
| DyLight 649 |
652 |
670 |
Figure 1. Excitation and emission spectra of different fluorophore-conjugated, affinity-purified antibodies. This figure illustrates only the relative shape and position of each fluorophore in the peak region of its excitation and emission following conjugation to antibodies. Quantitative comparisons should not be made since peak heights have been normalized. For clarity, spectra for DyLight-antibody conjugates are not included here. For comparison, see DyLight-antibody spectra. All spectra were obtained with a M-Series spectrofluoro-meter system from Photon Technology International, Inc. |
For flow cytometry, AMCA can be excited with a mercury lamp, or with a water-cooled argon ion laser which emits some lines in the UV . AMCA has been used mostly for multiple labeling since there is minimal fluorescence overlap with green-fluorescing dyes and little or no overlap with longer wavelength-emitting fluorophores. Applications for multiple labeling with this probe include both immunofluorescence microscopy and flow cytometry. AMCA is not suggested for single labeling in one-photon microscopy because of its relatively weak signal and rapid fading. However, AMCA has been found to be a bright and photostable dye for 2-photon microscopy (personal communication from Dr. Brian Matsumoto, UC Santa Barbara).
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