Chromogenic substrates are used in colorimetric detection. They are simple and easy to use. Suitable for most immunotechniques – from immunohistochemistry to Western blotting and ELISA, they offer a very cost-effective method of detection.
Chromogenic substrates can be used in a number of immunohistochemical applications from staining tissue with IHC through to Western blotting. The chromogenic substrate is added to a blot or tissue previously incubated with an enzyme-conjugated antibody (typically horseradish peroxidase (HRP) or alkaline phosphatase (AP)), which converts the substrate to a colored precipitate. Signal development is arrested by simply washing off the substrate. The precipitate is visible to the naked eye, and on a Western blot, it can be detected without special equipment as a colored band. The chromogenic precipitate can be seen on the tissue under a normal light microscope when used for immunohistochemistry (IHC). Colorimetric detection is easy to use, although it may require optimization or additional staining to improve signal over background in samples expressing low antigen.
Chromogenic reagents are available for the different reporter enzymes, HRP, AP, GOD (Glucose oxidase) and β-Gal (β galactosidase). The substrates are available in different colors and sensitivities. Depending on the assay, a soluble or insoluble substrate can be chosen.
Alcohol insoluble chromogens are appropriate for Western blotting and IHC where counterstains or mounting media are used. The soluble dyes are better suited to ELISA and plate based assays.
Western blotting and dot blotting
When used in Western blotting or dot blotting, the chromogenic substrate appears as colored band or spot on the membrane at the locations of the immobilized antigen-antibody complexes (Figures 2 & 3). The blot can be developed until the signal of the bands reach the intensity required, this allows for a good level of sensitivity as the development of the blot can be observed directly and the reaction halted immediately by washing off the substrate. The developed membrane can then be imaged or stored for subsequent use. Samples with low sample concentration (low antigen) may require extended development, which may lead to higher background, obscuring bands.
Colorimetric ELISA measures the optical density of a soluble colored product which is usually proportional to the amount of analyte present in the sample, allowing relative quantification of the analyte. Like other immunotechniques, ELISA requires optimization of timing and development conditions to obtain accurate and reproducible assays.
Colorimetric detection can be a very sensitive method for the immunostaining of tissue and cells. Different substrates offer different sensitivities and colors to aid identification, multiple antigen recognition is possible as colors can be distinguished from one substrate and another. A number of counterstains are available which can be used to increase contrast so that the IHC staining appears stronger. Figure 5 shows the brown color of 3,3’ diaminobenzidine (DAB staining) in combination with hematoxylin counter-staining of nuclei.
Reporter Enzymes (conjugated to antibody)
The most commonly conjugated reporter enzymes are horseradish peroxidase (HRP) from the horseradish plant Armoracia rusticana, and alkaline phosphatase (AP) from calf intestines, although Glucose oxidase (GOD) and ß-D-Galactosidase from E.coli can also be used. HRP and AP both offer different benefits depending on the application requirements. HRP is a small 40 kDa molecule which usually binds to an antibody in a ratio of 4:1. Its small size means good intracellular penetration and it’s less likely to cause steric hindrance with the antigen/antibody complex. AP is slightly larger (86 kDa) which may cause steric interference but the substrate-converting reaction is linear, which may mean the detection incubation could be extended and potentially be more sensitive. AP also removes the possibility of non-specific staining of tissues with high levels of endogenous peroxidases – a limiting factor in HRP.
Each reporter enzyme can be used with a number of different chromogenic substrates which are available in a variety of specifications and formats offering different sensitivities, some common ones are summarized in the table below.
|AP||Insoluble||BCIP & NBT (5-Bromo-4-Chloro-3-Indolyl Phosphate (BCIP) & Nitro blue Tetrazolium)||Blue/purple||High|
|AP||Soluble||Fast Red TR (4-Chloro-2-methyl benzenediazonium)||Red/orange||High|
|HRP||Soluble1||TMB (3,3′, 5,5;-tetramethylbenzidine)||Dark blue||High|
|HRP||Soluble||CN (4-chloro-1-naphthol)||Blue purple||Low|
|HRP||Soluble||ABTS (2,2′-azino-bis(3-ethylbenzothiazoline-6-sulphonic acid)||Green||Low|
|HRP||Soluble||OPD (o-phenylenediamine dihydrochloride)||Yellow||Medium|
|AP||Soluble||PNPP (p-Nitrophenyl Phosphate)||Yellow||High|
|β -Gal||Insoluble||X-Gal (5-Bromo-4-Chloro-3-indolyl-B-D-Galactopyranoside)||Blue||–|
|GOD||Low solubility||t-NBT (2,2′,5-5′-tetra-p-nitrophenyl-3,3′ -(3,3′ -dimethoxy-4,4′-biphenylene)-di tetrazolium chloride)||Black/Brown||High|
Table 1: Commonly used colorimetric substrates.
- TMB in the presence of peroxide and HRP can be precipitated into membrane.
- T-NBT may be used in combination with BCIP.
|Learn more:||Do more:|
|Colorimetric Western blotting||Cite and win|
|Fluorescent Western blotting||Far-red and infrared conjugates|
|Direct and In-direct Western blotting||Technical information on reporter enzyme conjugates|
Alberts B et al (1994) Molecular biology of the Cell. 3rd Ed. Garland press. London
Kalyuzhny A (2016) Immunohistochemistry – Essential Elements and Beyond. Springer International Publishing Switzerland.
Roitt et al (2005) Immunology. 6th Ed. Mosby. Spain
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